Name |
Type |
World Wide Web address |
DATABASES |
CATH |
S |
http://www.biochem.ucl.ac.uk/bsm/cath/ |
DBAli |
S |
http://www.salilab.org/DBAli/ |
GenBank |
S |
http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html |
GeneCensus |
S |
http://bioinfo.mbb.yale.edu/genome |
MODBASE |
S |
http://salilab.org/modbase/ |
MSD |
S |
http://www.ebi.ac.uk/msd/ |
NCBI |
S |
http://www.ncbi.nlm.nih.gov/ |
PDB |
S |
http://www.rcsb.org/pdb/ |
PSI |
S |
http://www.nigms.nih.gov/psi/ |
Sacch3D |
S |
http://genome-www.stanford.edu/Sacch3D/ |
SCOP |
S |
http://scop.mrc-lmb.cam.ac.uk/scop/ |
TIGR |
S |
http://www.tigr.org/tdb/mdb/mdbcomplete.html |
TrEMBL |
S |
http://srs.ebi.ac.uk/ |
FOLD ASSIGNMENT |
123D |
S |
http://123d.ncifcrf.gov/ |
3D-PSSM |
S |
http://www.sbg.bio.ic.ac.uk/~3dpssm/index2.html |
BIOINBGU |
S |
http://www.cs.bgu.ac.il/~bioinbgu/ |
BLAST |
S |
http://www.ncbi.nlm.nih.gov/BLAST/ |
DALI |
S |
http://www.ebi.ac.uk/dali/ |
FASS |
S |
http://ffas.ljcrf.edu |
FastA |
S |
http://www.ebi.ac.uk/fasta3/ |
FRSVR |
S |
http://fold.doe-mbi.ucla.edu/ |
FUGUE |
S |
http://www-cryst.bioc.cam.ac.uk/~fugue/ |
LOOPP |
S |
http://ser-loopp.tc.cornell.edu/cbsu/loopp.htm |
PHD, TOPITS |
S |
http://www.predictprotein.org/ |
PHYRE |
S |
http://www.sbg.bio.ic.ac.uk/~phyre/ |
PROFIT |
P |
http://www.came.sbg.ac.at/ |
SAM-T99/T98 |
S |
http://www.cse.ucsc.edu/research/compbio/HMM-apps/ |
THREADER |
S |
http://bioinf.cs.ucl.ac.uk/threader/ |
UCLA-DOE FRSVR |
S |
http://fold.doe-mbi.ucla.edu/ |
SEQUENCE ALIGNMENT |
BCM SERVER |
S |
http://searchlauncher.bcm.tmc.edu |
BLAST2 |
S |
http://www.ncbi.nlm.nih.gov/blast/bl2seq/wblast2.cgi |
BLOCK MAKER |
S |
http://blocks.fhcrc.org/blocks/blockmkr/make_blocks.html |
CLUSTALW |
S |
http://www.ebi.ac.uk/clustalw/ |
FASTA3 |
S |
http://www.ebi.ac.uk/fasta3/ |
Gerstein Group |
S |
http://bioinfo.mbb.yale.edu/Align/ |
MULTALIN |
S |
http://prodes.toulouse.inra.fr/multalin/multalin.html |
MODELING |
3D-JIGSAW |
S |
http://www.bmm.icnet.uk/servers/3djigsaw/ |
CPH-Models |
S |
http://www.cbs.dtu.dk/services/CPHmodels/ |
COMPOSER |
P |
http://www-cryst.bioc.cam.ac.uk/ |
CONGEN |
P |
http://www.congenomics.com/congen/congen.html |
TIGERFAMS |
S |
http://www.tigr.org/TIGRFAMs/index.shtml |
ICM |
P |
http://www.molsoft.com/ |
InsightII |
P |
http://www.accelrys.com/ |
MODELLER |
P |
http://salilab.org/modeller/ |
ModWeb |
S |
http://salilab.org/modweb |
QUANTA |
P |
http://www.accelrys.com/ |
SYBYL |
P |
http://www.tripos.com/ |
SCWRL |
P |
http://dunbrack.fccc.edu/SCWRL3.php |
SWISS-MODEL |
S |
http://www.expasy.ch/swissmod/SWISS-MODEL.html |
WHAT IF |
P |
http://www.cmbi.kun.nl/whatif/ |
MODEL ASSESSMENT |
ANOLEA |
S |
http://protein.bio.puc.cl/cardex/servers/index.html |
BIOTECH |
S |
http://biotech.embl-ebi.ac.uk:8400/ |
ERRAT |
S |
http://www.doe-mbi.ucla.edu/Services/ERRATv2/ |
PROCHECK |
P |
http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html |
ProsaII |
P |
http://www.came.sbg.ac.at/ |
VERIFY3D |
S |
http://www.doe-mbi.ucla.edu/Services/Verify_3D/ |
WHATCHECK |
P |
http://www.sander.embl-heidelberg.de/whatcheck/ |
MODEL EVALUATION |
CAFASP |
S |
http://bioinfo.pl/cafasp/ |
EVA |
S |
http://cubic.bioc.columbia.edu/eva/ |
LiveBench |
S |
http://bioinfo.pl/LiveBench/ |
OTHERS... |
BioInfo |
S |
http://BioInfo.PL/meta/ |
CASP |
S |
http://predictioncenter.gc.ucdavis.edu/ |
GeneQuiz II |
S |
http://columba.ebi.ac.uk:8765/ext-genequiz/ |
Gerstein Group |
S |
http://bioinfo.mbb.yale.edu/genome/ |
META-PP |
S |
http://cubic.bioc.columbia.edu/pp/doc/meta_intro.html |
PEDANT |
S |
http://pedant.gsf.de/ |
SearchLauncher |
S |
http://searchlauncher.bcm.tmc.edu/ |
WorkBench |
S |
http://workbench.sdsc.edu/ |