Structural Genomics @CNAG CRG


Presentations by our members

Download the PDF version of our seminars , courses or posters

2017

9 March
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan.
15 February
Drug blending as a mechanism to overcome drug resistance in cancer therapy.
IRB, Barcelona, Spain.
6 February
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
HGM2017, Barcelona, Spain.

2016

7 December
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the MPIP. Cologne, Germany
3 November
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the CiC-CSIC. Salamanca, Spain
20-21 October
3D Genomics.
Lectures at the UB Master. Barcelona, Spain
18 October
3D Genomics.
Lecture at the CRG-UPF Master. Barcelona, Spain
10-14 October
Classes at the 3DAROC'16 Course.
3DAROC16 course. Gulbenkian Institute, Oeiras, Portugal
13 July
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the QB3-UCSF Institute. San Francisco, USA
12 April
3D Genomics.
Lecture at the UAM Bioinformatics Master. Madrid, Spain
12 April
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the CNIO. Madrid, Spain
11 March
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the IDIBELL. Barcelona, Spain

2015

13 November
Data integration for 3D structure determination.
Lecture at the UAB Master. Bellaterra, Spain
4-5 November
3DGenomics.
Lectures at the UB Master in Genetics and Genomics. Barcelona, Spain
27 October
Data integration for 3D structure determination.
Lecture at the CRG Master. Barcelona, Spain<
21 October
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Group Leader Seminar at the PRBB, Barcelona, Spain
7-11 October
A talk and three posters at the 2015 EMBO Nuclear Structure and Dynamics Meeting.
Nucleus2015. Isle sur Sorgue, France.
30 Sep
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the Illumina UMG, Valencia, Spain
29 Sep
Assessing the limits of restraint-based 3D Genomics.
Chromosome Conformation Course Seminar at CNAG-CRG, Barcelona, Spain
18 Sep
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the IBEC, Barcelona, Spain
16 Sep
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
Seminar at the ICR, London, UK
10-14 July

Three talks and four posters at the 2015 ISMB/ECCB meeting in Ireland.
ISMB/ECCB2015. Dublin, Ireland.
11 May
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
EPIGEN Seminar, Naples, Italy
24 March
3D Genomics tutorial at the VIZBI2015.
VIZBI Meeting 2015. BROAD Institute, Boston, USA
10 March
Does color have structure? Modeling 3D domains of the fly genome.
V Chromatin and Epigenomics meeting of the SCB. Barcelona, Spain
Feb,Mar,Apr

Structural Bioinformatics.
Lectures at the Bioinformatics Master of the UV, Valencia, Spain.

2014

12 November
Data integration for 3D structure determination.
Lecture at the UAB Master. Barcelona, Spain
21 October
Data integration for 3D structure determination.
Lecture at the CRG-UPF Master. Barcelona, Spain
22-24 September
Three talks at the XII Symposium on Bioinformatics in Spain.
JBI2014. Sevilla, Spain.
15-19 September
A talk and three posters at the advanced workshop on interdisciplinary views on chromosome structure and function.
ICTP. Trieste, Italy.
7-10 September
A tutorial and a talk at the ECCB14.
ECCB14. Strasbourg, France.
5 July
Mating type specific folding of yeast ChrIII revealed by three-dimensional modeling.
14th HFSP Awardees Meeting. Lugano, Switzerland.
20 June
Determining the 3D structure of genomes and genomic domains.
Emerging Trends in Computational Biology. Biopolis, Singapore.
23 May
Determining the 3D structure of genomes and genomic domains.
Seminar at the CRAG center. Bellaterra, Spain.
8 April
Hybrid [integrative] methods for structure determination.
Computational Structural Biology. EMBO Course. EBI-EMBL, UK.
6 March
Visualizing the third dimension of genomes.
VizBi 2014. Heidelberg, Germany.
20 February
Structure determination of genomes by satisfaction of spatial restraints.
2nd CNAG Symposium on Epigenetics. CNAG, Barcelona, Spain
Feb,Mar,Apr

Structural Bioinformatics.
Lectures at the Bioinformatics Master of the UV, Valencia, Spain.
5 February
Structure determination of genomes by satisfaction of spatial restraints.
PRBB Group Leader Talk. PRBB. Barcelona, Spain

2013

17 December
Structure determination of genomes by satisfaction of spatial restraints.
Computational and Methematical Biology Interest Group. LRI. London, UK
4 December
A genome-wide quest for drug discovery targets against tropical diseases.
Lecture at the UPF Master. Barcelona, Spain
2 December
Data integration for 3D structure determination.
Lecture at the UAB Master. Barcelona, Spain
22 November
Hormone-induced structural transitions of TADs in the breast cancer genome.
I Barcelona Conferences on Epigenetics and Cancer. Barcelona, Spain
2-6 November
pLoci TDI TDI
Chromosome structure determination using modeling and Hi-C data.
The Gulbenkian Training Programe in Bioinformatics, Oeiras, Portugal.
15 October
Data integration for 3D structure determination.
Lecture at the CRG-UPF Master. Barcelona, Spain
2-6 October
pLoci TDI TDI TDI
Four posters at the EMBO-Nucleus2013.
EMBO-Nucleus 2013, Isle sur le Surgue, France.
5-6 July
Hormone induced structural reorganization of TADs in the breast cancer genome.
SEB Annual Main Meeting 2013. Valencia, Spain
22-23 May
Hormone induced structural reorganization of TADs in the breast cancer genome.
Instruct Biennial Structural Biology Meeting, Heidelberg, Germany.
17-18 May
Hormone induced structural reorganization of TADs in the breast cancer genome.
EpiGeneSys Student/PostDoc Workshop, Barcelona, Spain.
20 March
Determination of hormone induced structural changes in TADs.
IRB Barcelona BioMed Seminar, Barcelona, Spain.
4 March
Determination of hormone induced structural changes in TADs.
BCC Meeting on Chromatin Organization, Barcelona, Spain.
Feb,Mar,Apr

Structural Bioinformatics.
Lectures at the Bioinformatics Master of the UV, Valencia, Spain.
17 January
Data integration for 3D structure determination.
UPF-CRG Master class, Barcelona, Spain.

2012

3 December
A genome-wide quest for drug discovery targets against tropical diseases.
Lecture at the Pharmacogenomics Master of the UPF, Barcelona, Spain.
7 November
Structure determination of genomes by satisfaction of spatial restraints.
Jornadas Red Valeciana de Genómica y Proteómica, Valencia, Spain.
11 October
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the IDIBAPS, Barcelona, Spain.
28 September
Structure determination of genomes by satisfaction of spatial restraints.
3rd READNA Meeting, Barcelona, Spain.
15 September
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the BioGUNE, Bilbao, Spain.
5 September
pLoci
Comparative Docking for the Tropical Disease Initiative.
SHIPREC meeting, Barcelona, Spain.
4 July
pLoci
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation.
International meeting of the SBE 2012, Barcelona, Spain.
26 June
pLoci
3D Genomics.
National Course of the Spanish Genetics Society, Carmona, Spain.
24 April
pLoci
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation.
RECOMB12, Barcelona, Spain.
22 February
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the CSC-MRC, London, UK.
16 February
pLoci
Integrative Structure Modeling.
Lecture at the Bioinformatics Master Degree at the UCM, Madrid, Spain.
16 February
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the CNIO, Madrid, Spain.
23-25 January
pLoci TDI TDI TDI
A talk and three posters at the JBI2012.
Jornadas de Bioinformática 2012, Barcelona, Spain.

2011

1 December
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the IBMB-CSIC, Barcelona, Spain.
8 November
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the HHMI - Janelia Farm. Washington, USA
4 November
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the MIT. Boston, USA
3 November
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the UMASS Medical School. Worcester, USA
10 October
pLoci
Structure determination of genomes by satisfaction of spatial restraints.
Seminar at the Biozentrum-SBI. Basel, Switzerland
30 September
TDI
The three-dimensional structure of a bacterial genome.
EMBO - Nuclear Structure and Dynamics. Isle sur le Surge, France
30 September
TDI
Structure determination of genomes by satisfaction of spatial restraints.
EMBO - Nuclear Structure and Dynamics. Isle sur le Surge, France
19-21 September
TDI
Comparative docking for predicting molecular targets of known drugs.
XVI Congress of the SEQT. Valencia, Spain
17-23 September
TDI TDI
Structure determination of genomes by satisfaction of spatial restraints.
Chromatin and Systems Biology Summer School. Spetses Island, Greece
6-9 September
Presentacion Curso Modelado por Homología
Curso CEFIRE. Bioinformática y Genómica
Lectures at Prince Felipe Research Center. Valencia. Spain
18 July
TDI
Structure determination of genomes and genomic domains by satisfaction of spatial restraints.
ISMB-ECCB 2010. Vienna. Austria
12 July
TDI
The Tropical Disease Initiative.
XXII Congreso Nacional de Microbiología. Salamanca. Spain
4 July
TDI
The Tropical Disease Initiative.
ERA-NET PathoGenoMics Workshop: Future of PathoGenoMics. Lisbon. Portugal
10 April
3D Genomes
The 3D architecture of a bacterial genome.
EMBO Workshop on Chromatin structure, organization and dynamics. Prague. Czech Republic
12 January
Comparative Modeling Docking
Course on Comparative Modeling and Docking.
Lectures at Prince Felipe Research Center. Valencia. Spain

2010

7 December
3D folding of chromosomal domains in relation to gene expression.
Seminar at The LBME-CNRS. Toulouse. France
25 November
3D folding of chromosomal domains in relation to gene expression.
Seminar at The NIMR-MRC. London. UK
11 November
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.
Jornadas de la Red Valenciana de Proteómica y Genómica. Valencia. Spain
27 October
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.
X Spanish Symposium on Bioinformatics (JBI2010). Malaga. Spain
6 October
The Tropical Disease Initiative.
Barcelona Innovation workshop: NanoBiotechnology & IT for Health. Barcelona. Spain
23 September
3D folding of chromosomal domains in relation to gene expression.
Seminar at The Gulbenkian Science Institut (IGC). Oeiras. Portugal
20-24 September
Comparative Modeling MODELLER Docking Final Exercise
Structural Genomics and Drug Discovery.
Lectures at The Gulbenkian Training Programme in Bioinformatics. Oeiras. Portugal
12 July
Comparative docking for predicting molecular targets of known drugs.
XXVI Meeting of the XRQTC. Bellaterra, Spain
11 July
The 3D folding of the a-globin gene domain reveals formation of chromatin globules.
ISMB2010. Boston, MA, USA
8 July
3D folding of chromosomal domains in relation to gene expression.
Seminar at the CNB-CSIC. Madrid, Spain
30 April
3D folding of chromosomal domains in relation to gene expression.
Biological Interfaces Workshop. The Thomas Young Center. London, UK
8 April
Towards a third dimension in cell regulation.
Seminar at the CIB-CSIC. Madrid, Spain
15 March
Comparative docking for predicting molecular targets of known drugs.
ISCB - Latin America 2010. Montevideo, Uruguay
25 January
3D folding of chromosomal domains in relation to gene expression.
Seminar at the Birkbeck College. London, UK

2009

3 December
A kernel for the Tropical Disease Initiative.
Keynote presentation at the ISMB-Africa 2009. Bamako. Mali.
12 November
3D folding of chromosomal domains in relation to gene expression.
Red de Genomica y Proteomica de Valencia. UV, Valencia, Spain
11 November
3D folding of chromosomal domains in relation to gene expression.
Chromatin Domains and Insulators. UNIA Biomedicine Workshop. Baeza, Spain
3-6 November
From 5C to 3D: a hybrid method for determining the structure of genomes.
Jornadas de Bioinformatica 2009. Lisbon. Portugal.
30 September
From 5C to 3D: a hybrid method for determining the structure of genomes.
EMBO - Nulecar structure & dynamics. Isle sur la Sourge, France
27-31 July
Comparative Modeling MODELLER Docking Final Exercise
Structural Genomics.
Lectures at The Gulbenkian Training Programme in Bioinformatics. Oeiras. Portugal
16 July
A kernel for the Tropical Disease Initiative.
DUKE-NUS. Singapore
15 July
RNA comparative structure modeling.
Bioinformatics Institute, Biopolis, Singapore
18 June
SARA: a method for RNA structure alignment and function annotation.
Lipari International Summer School on BioInformatics and Computational Biology. Lipari, Italy
24 April
Comparative protein structure prediction
Graduate Program class at the Universitat Autonoma de Barcelona, Bellaterra, Spain
25 February
A kernel for the Tropical Disease Initiative.
Seminar at the IBV-CSIC. Valencia. Spain.
24 February
A kernel for the Tropical Disease Initiative.
Seminar at the GSK Tres Cantos campus. Madrid. Spain.

2008

3-7 November
Comparative Modeling MODELLER Docking Final Exercise
PHARMACOGENOMICS: NEW OPORTUNITIES FOR DRUG DISCOVERY.
Lectures at The Gulbenkian Training Programme in Bioinformatics. Oeiras. Portugal.
6-10 October
Dia 1 Marc Dia 2 Marc
PERSPECTIVAS BIOINFORMATICAS. GENOMICA ESTRUCTURAL.
Lectures at the Universidad de Buenos Aires, Buenos Aires, Argentina
22-26 September
RNA STRUCTURE ALIGNMENT BY A UNIT-VECTOR APPROACH
ECCB'08. Sardinia, Italy
12 September
COMPARATIVE DOCKING ON PROTEIN STRUCTURE MODELS FROM TEN TROPICAL DISEASE GENOMES
XXXI Congreso Sociedad Española de Bioquímica y Biología Molecular. Bilbao, Spain
22 April
THE TROPICAL DISEASE INITIATIVE
New Medicine Research Collaborations. The Vrije Universiteit Brussel. Brussels, Belgium
29 April
SARA: A TOOL FOR RNA STRUCTURE ALIGNMENT.
Non-Coding RNAs: Computational Challenges and Applications. Antalya, Turkey
21 April
COMPARATIVE DOCKING ON PROTEIN STRUCTURE MODELS FROM TEN TROPICAL DISEASE GENOMES
Seminar at the Université Libre de Bruxelles. Brussels, Belgium
18 April
COMPARATIVE PROTEIN STRUCTURE PREDICTION
Graduate Program class at the Universitat Autonoma de Barcelona, Bellaterra, Spain
13 February
SARA: A TOOL FOR RNA STRUCTURAL ALIGNMENT
8th Spanish Conference on Bioinformatics. Valencia, Spain
13 February
THE USE OF EVOLUTIONARY INFORMATION IMPROVES THE PREDICTION OF DISEASE RELATED PROTEIN MUTATIONS
8th Spanish Conference on Bioinformatics. Valencia, Spain

2007

19 December
COMPARATIVE STRUCTURE BIOLOGY
II Curso de Bioinformática. Universitat d'Alacant. Spain
23 November
SARA: A TOOL FOR RNA STRUCTURAL ALIGNMENT
6th RANN meeting. Valencia, Spain
28 September
COMPARATIVE DOCKING ON PROTEIN STRUCTURE MODELS FROM TEN TROPICAL DISEASE GENOMES
Seminar at the Centro de Investigación Prícipe Felipe. Valencia, Spain
27 September
DESCUBRIMIENTO DE DIANAS TERAPÉUTICAS PARA ENFERMEDADES TROPICALES
II Jornadas de Automática e Informática Industrial en la Biotecnología y Biomedicina. ai2. UPV. Valencia, Spain
5 September
BIOINFORMATICS AT THE CIPF
XII meeting of the Spanish Neurobiology Society. Valencia, Spain
23 July
COMPARATIVE DOCKING ON PROTEIN STRUCTURE MODELS FROM TEN TROPICAL DISEASE GENOMES
ISMB/ECCB 2007. Vienna, Autria
22 July
SELECTIVE PREASSURE IMPROVES THE PREDICTION OF DISEASE RELATED nsSNP IN HUMAN
ISMB/ECCB 2007. Vienna, Austria
21 July
SARA: A TOOL FOR RNA STRUCTURAL ALIGNMENT
3DSIG - ISMB/ECCB 2007. Vienna, Austria
2 July
COMPARATIVE PROTEIN STRUCTURE MODELS FOR FUNCTIOnAL ANNOTATION
Semiar at the Evolutionary group. UPF, Barcelona, Spain
10 May
COMPARATIVE PROTEIN STRUCTURE PREDICTION
Master on Molecular, Cellular and Genetic Biology. Universitat de Valencia, Valencia, Spain
27 April
COMPARATIVE PROTEIN STRUCTURE PREDICTION
6th European School in Bioinformatics. Centro de Investigación Príncipe Felipe. Valencia, Spain
20 April
COMPARATIVE PROTEIN STRUCTURE PREDICTION
Graduate Program class at the Universitat Autonoma de Barcelona, Bellaterra, Spain
30 March
THE DBALI TOOLS: MINING THE PROTEIN STRUCTURE SPACE
Seminar at the EMBL-Hamburg Outstation. Hamburg, Germany
22 February
OPEN SOURCE FOR BIOLOGISTS & OPEN SOURCE BIOLOGY
Semana Informatica. Valencia, Spain
19 February
COMPARATIVE PROTEIN STRUCTURE MODELS FOR FUNCTIOnAL ANNOTATION
8th Winter School in Bioinformatics. Bologna, Italy

2006

21 November
THE ANNOLITE AND ANNOLYZE PROGRAMS FOR AUTOMATIC ANNOTATION OF PROTEIN STRUCTURES
7th Spanish Conference on Bioinformatics. Zaragoza, Spain
9 November
MODELING THE STRUCTURE AND FUNcTION OF PROTEINS AND MACROMOLECULAR ASSEMBLIES
2a Reunion del la red Valenciana de Proteomica y Genomica, CIPF, Valencia, Spain
13 October
THE TROPICAL DISEASE INITIATIVE
The Added Value of Medication in a Patient-centered Health Care. The Vrije Universiteit Brussel. Brussels, Belgium
1 September
THE ANNOLITE AND ANNOLYZE PROGRAMS FOR AUTOMATIC ANNOTATION OF PROTEIN STRUCTURES
The Second Automated Function Prediction Meeting. UCSD. San Diego, CA, USA
7 April
THE TROPICAL DISEASE INITIATIVE
TechTalk at Google. Mountain View, CA, USA
13 February
THE TROPICAL DISEASE INITIATIVE
Stanford University. Stanford, CA, USA
19 January
INTRODUCTION TO BIOINFORMATICS (BMI206)
Graduate Program in Biological and Medical Informatics. UCSF, San Francisco, CA, USA

2005

3 December
THE TROPICAL DISEASE INITIATIVE
Neglected disease symposium. QB3. San Francisco, CA, USA
21-23 June
COMPARATIVE PROTEIN STRUCTURE PREDICTION
Master in Bioinformatics for Health Sciences. Universitat Pompeu Fabra and Universitat de Barcelona, Barcelona, Catalonia
22-24 May
THE TROPICAL DISEASE INITIATIVE
Collective Computational Biology for Infectious Disease. SAMSI. Research Triangle Park, NC, USA
17 May
THE FDA WEB SITE
Lecture at the Biopharmaceutical Sciences Bioinformatics course (BPS114) UCSF, San Francisco, CA, USA
3 February
INTRODUCTION TO BIOINFORMATICS (BMI206)
Graduate Program in Biological and Medical Informatics. UCSF, San Francisco, CA, USA

2004

30 November
ALIGNING SEQUENCES AND STRUCTURES FOR COMPARATIVE MODELING
5th Spanish Conference on Bioinformatics. Barcelona, Catalonia
21-22 October
ALIGNING SEQUENCES FOR COMPARATIVE MODELING
Frontiers in Computational Biophysics and Drug Design. Howard University, Washington DC, USA
17-20 June
COMPARATIVE PROTEIN STRUCTURE PREDICTION
12th annual workshop in molecular modeling. BMC, Uppsala, Sweden
14 June
MODELING THE STRUCTURES OF PROTEINS AND MACROMOLECULAR ASSEMBLIES
Symposium in protein structure at the german R&D site of Boehringer Ingelheim. Biberach, Germany
23 March
INTRODUCTION TO PROTEIN STRUCTURE PREDICTION
BayGenomics Workshop. UCSF, San Francisco, CA, USA
17 February
INTRODUCTION TO BIOINFORMATICS (BMI206)
Graduate Program in Biological and Medical Informatics. UCSF, San Francisco, CA, USA
8 January
FRAGMENTING THE PDB
Seminar at the Institut Municipal d'Investigacio Medica/GRIB. Barcelona, Spain

2003

25-26 September
COMPARATIVE PROTEIN STRUCTURE MODELING OF GENES AND GENOMES
XXVI Annual meeting of the Molecular Biolgy Society of Chile. Santiago de Chile, Chile
23-25 September
COMPARATIVE PROTEIN STRUCTURE MODELING OF GENES AND GENOMES
BIOPHEX Conference. San Jose, CA, USA
22 August
PROTEIN STRUCTURE MODELING
BayGenomics Workshop. UCSF, San Francisco, CA, USA
24-27 March
COMPARATIVE PROTEIN STRUCTURE MODELING OF GENES AND GENOMES
New approaches in drug design and discovery. Marburg, Germany
27-28 February
IDENTIFICATION OF STRUCTURAL DOMAINS IN PROTEINS
Protein Domains: Identification, Classification and Evolution. DIMACS. Piscataway, NJ, USA

2002

4-5 June
PROTEIN STRUCTURE MODELING FOR STRUCTURAL GENOMICS
11th Bioinformatics and Genome Research. CHI. San Diego, CA, USA
5-10 February
PREDICTING THE 3D STRUCTURE OF DIFFICULT PROTEINS
3rd winter school. Bologna, Italy.
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